Ubuntu
abpoa package

abpoa 1.5.2-1 source package in Ubuntu

Changelog

abpoa (1.5.2-1) unstable; urgency=medium

  * New upstream version 1.5.2
  * d/control: declare compliance to standards version 4.7.0.
  * buildflags.patch: refresh.
  * baseline.patch: unfuzz.
  * d/control: the build depends on python3-wheel.
  * d/t/run-unit-test: also run basic --help sorts of tests.
  * relax-cython-dep.patch: new: allow depending on cython3.
  * d/m/abpoa.1: update the manual page.
  * d/rules: check manual page version consistency.
    This ensures abpoa manual page refresh is not forgotten on newer
    upstream versions; it might be better to fully automate its
    construction though.

 -- Étienne Mollier <email address hidden>  Sat, 20 Jul 2024 12:26:29 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc

Downloads

File Size SHA-256 Checksum
abpoa_1.5.2-1.dsc 2.2 KiB ab53a9d50de5b917b853b969dbd86ffe2887104c476909fe7ad2dc6de35bd108
abpoa_1.5.2.orig.tar.gz 159.5 KiB 69b1f0ec2b200f813964b733f298389266d89696ee4472f727e80e65447a9812
abpoa_1.5.2-1.debian.tar.xz 9.5 KiB 6d82a624924fa10c5ecff37c59b806c33bdd8a93bb5600318e9e66d2da09ee4a

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Binary packages built by this source

abpoa: adaptive banded Partial Order Alignment

 abPOA is an extended version of Partial Order Alignment (POA) that performs
 adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA
 can perform multiple sequence alignment (MSA) on a set of input sequences and
 generate a consensus sequence by applying the heaviest bundling algorithm to
 the final alignment graph.
 .
 abPOA can generate high-quality consensus sequences from error-prone long
 reads and offer significant speed improvement over existing tools.
 .
 abPOA supports three alignment modes (global, local, extension) and flexible
 scoring schemes that allow linear, affine and convex gap penalties. It right
 now supports SSE2/SSE4.1/AVX2 vectorization.
 .
 For more information please refer to the paper[1] published in Bioinformatics.
 .
 [1]: https://dx.doi.org/10.1093/bioinformatics/btaa963

abpoa-dbgsym: debug symbols for abpoa
python3-pyabpoa: adaptive banded Partial Order Alignment - python3 module

 abPOA is an extended version of Partial Order Alignment (POA) that performs
 adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA
 can perform multiple sequence alignment (MSA) on a set of input sequences and
 generate a consensus sequence by applying the heaviest bundling algorithm to
 the final alignment graph.
 .
 abPOA can generate high-quality consensus sequences from error-prone long
 reads and offer significant speed improvement over existing tools.
 .
 abPOA supports three alignment modes (global, local, extension) and flexible
 scoring schemes that allow linear, affine and convex gap penalties. It right
 now supports SSE2/SSE4.1/AVX2 vectorization.
 .
 This package provides the python3 module of abPOA.

python3-pyabpoa-dbgsym: debug symbols for python3-pyabpoa